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- Title
Utility of large subunit for environmental sequencing of arbuscular mycorrhizal fungi: a new reference database and pipeline.
- Authors
Delavaux, Camille S.; Sturmer, Sidney L.; Wagner, Maggie R.; Schütte, Ursel; Morton, Joseph B.; Bever, James D.
- Abstract
Keywords: amplicon sequencing; bioinformatics; eDNA; Glomeromycota; large subunit EN amplicon sequencing bioinformatics eDNA Glomeromycota large subunit 3048 3052 5 02/19/21 20210315 NES 210315 Background Arbuscular mycorrhizal fungi (AMF - phylum Glomeromycota) form symbioses with most plant species worldwide and play critical roles in plant nutrient and water uptake, pathogen resistance and soil aggregation (Smith & Read, 2008; Delavaux I et al i ., 2017; Brundrett & Tedersoo, 2018). Because AMF community composition influences ecological function (van der Heijden I et al i ., 1998; Vogelsang I et al i ., 2006; Koziol I et al i ., 2018), understanding patterns of AMF composition is a research priority. Reference database and pipeline We present a current curated database and reference tree using AMF sequences from several sources: a subset of sequences published by Krüger I et al i . GLO:F0R/15mar21:nph17080-fig-0001.jpg PHOTO (COLOR): 1 Arbuscular mycorrhizal fungi (AMF) large subunit (LSU) backbone tree.
- Publication
New Phytologist, 2021, Vol 229, Issue 6, p3048
- ISSN
0028-646X
- Publication type
Academic Journal
- DOI
10.1111/nph.17080